PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.012930.1
Common NameCsa_3G354520, LOC101211617
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 377aa    MW: 41228.2 Da    PI: 4.8236
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.012930.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.5e-14106157155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h  +Er+RR+++N+ +  Lr+l+P     + kK + a+i   +veYIk+Lq
  Cucsa.012930.1 106 QRMSHITVERNRRKQMNEHLTVLRSLMPCF---YVKKGDQASIIGGVVEYIKELQ 157
                     79***************************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.76E-15103161No hitNo description
SuperFamilySSF474591.83E-18104181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.624105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-14106168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-12106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-12111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MVDTFADLFQ QNDEFVDHTL NPHFEGDDLF SIFESLENVA EFTMIEDDIE PVKDGEETTS  60
LVFSETELET SPKTKRLKTI AATSPTAAMT STGLSSSEDP NPDGPQRMSH ITVERNRRKQ  120
MNEHLTVLRS LMPCFYVKKG DQASIIGGVV EYIKELQQVL QSLEAKKQRK VVYSEVLSPR  180
VVSSPRPNLA MSPRKPPLSP RLNLPISPRT PQPTSPYSKP PPRLQQPPSA ATGGGAYNIP  240
SSSSSTTNMA NNNSLEPSPC NSCSTTNSSI DNNNNNNNSN SNSNNNNDLV ANSKSAIAEV  300
EVKFTGPNVV LKTVSPPIPG QAFKIISALE QLSLEILHVK ITTLDETMFN SFTIKIGIEC  360
QLSAEELAQQ IQQTFC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106117RMSHITVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818490.0LN681849.1 Cucumis melo genomic scaffold, anchoredscaffold00116.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149468.10.0PREDICTED: transcription factor SPEECHLESS
SwissprotQ700C71e-105SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLA0A0A0L7S90.0A0A0A0L7S9_CUCSA; Uncharacterized protein
STRINGGLYMA04G41710.11e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36863463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.14e-52bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]